Basic Science Neuropathology

Infectious

Infectious Neuropathology

What You'll Learn

  • Bacterial meningitis and abscess — the exudate, the stages, and the stains that confirm the organism
  • Viral encephalitis by signature inclusion and location (HSV, CMV, rabies, HIV)
  • Granulomatous & fungal CNS infection — TB, cryptococcus, and the angioinvasive molds
  • Parasitic disease — toxoplasma, neurocysticercosis, cerebral malaria

The neuropathology view — tissue findings and confirmatory stains. Clinical CNS-infection workup lives in the Infectious / Neuro-ID notes.

🔍 High-Yield Pearls
  • HSV-1 encephalitis = hemorrhagic necrosis of the inferomedial temporal lobes & limbic system; Cowdry type A intranuclear inclusions.
  • CMV = “owl-eye” intranuclear + granular cytoplasmic inclusions, periventricular ventriculitis, immunocompromised.
  • Cryptococcus = “soap-bubble” cysts in basal ganglia; capsule stains with mucicarmine (India ink on CSF).
  • Aspergillus: septate hyphae, acute-angle branching. Mucor: broad, pauciseptate, ribbon-like, right-angle branching. Both angioinvasive → hemorrhagic infarct.
  • Toxoplasma = necrotizing abscesses with tachyzoites + bradyzoite cysts; ring-enhancing lesions in AIDS (vs CNS lymphoma).
Bacterial Meningitis & Abscess
EntityPathologyConfirm
Acute pyogenic meningitisNeutrophilic exudate in subarachnoid space (convexities in pneumococcus; base in H. influenzae/TB); vascular congestion; risk of vasculitis, infarct, hydrocephalusGram stain + CSF culture (organism by age)
Cerebritis → abscessEarly cerebritis → central liquefactive necrosis → collagen/gliotic capsule (thinner on ventricular side → rupture risk)Gram / GMS / AFB + culture; MRI restricted diffusion
Viral Encephalitis
VirusLocation / grossSignature
HSV-1Hemorrhagic necrosis, inferomedial temporal & orbitofrontal / limbicCowdry A intranuclear inclusions; IHC/PCR
CMVPeriventricular necrosis / ventriculitis (immunosuppressed, congenital)Owl-eye intranuclear + cytoplasmic inclusions; cytomegaly
RabiesBrainstem, hippocampus, Purkinje cellsNegri bodies (eosinophilic cytoplasmic inclusions)
HIV encephalitisDeep white matter/basal gangliaMicroglial nodules + multinucleated giant cells
SSPE (measles)Cortex + white matter, years after measlesCowdry A intranuclear inclusions; neurofibrillary change
Granulomatous & Spirochetal
EntityPathologyStain
TuberculosisBasilar meningitis; caseating granulomas with Langhans giant cells; tuberculoma; endarteritis → infarctAcid-fast (Ziehl-Neelsen); culture/PCR
NeurosyphilisGeneral paresis (cortical atrophy, rod-cell microgliosis, spirochetes); tabes dorsalis (dorsal-column/root degeneration); gummas; meningovascularWarthin-Starry / IHC for T. pallidum
NeurosarcoidNon-caseating granulomas, basal leptomeninges, cranial nervesExclusion (stains negative for organisms)
Fungal Infection
FungusPathologyStain / clue
Cryptococcus“Soap-bubble” gelatinous cysts in basal ganglia/perivascular spaces; minimal inflammationMucicarmine capsule; India ink; narrow-based budding
AspergillusAngioinvasive → hemorrhagic infarct/abscessSeptate hyphae, acute-angle branching; GMS
MucormycosisRhino-orbital-cerebral, diabetic ketoacidosis; angioinvasion, tissue necrosisBroad, pauciseptate, right-angle hyphae; GMS
CandidaMicroabscesses (disseminated)Yeast + pseudohyphae; GMS/PAS
Parasitic Infection
ParasitePathologySignature
ToxoplasmaNecrotizing abscesses (grey-white junction, basal ganglia); ring-enhancing in AIDSTachyzoites (free) + bradyzoite cysts; IHC
NeurocysticercosisTaenia solium cysts; degenerating cyst → inflammation, edema, calcificationScolex with hooklets/suckers
Cerebral malariaP. falciparum; sequestration of parasitized RBCs in capillariesRing hemorrhages, Dürck granulomas
Naegleria fowleriAcute primary amebic meningoencephalitis (PAM); hemorrhagic necrotizing, olfactory-routeTrophozoites only in tissue (no cysts)
Acanthamoeba / BalamuthiaGranulomatous amebic encephalitis (GAE); subacute, immunocompromisedTrophozoites and cysts in tissue
High-Yield Facts
FindingDiagnosis
Hemorrhagic temporal-lobe necrosisHSV-1 encephalitis
Owl-eye inclusions, ventriculitisCMV
Negri bodiesRabies
Microglial nodules + giant cellsHIV encephalitis
Langhans giant cells + caseation, AFB+CNS tuberculosis
Mucicarmine+ soap-bubble cystsCryptococcus
Broad right-angle nonseptate hyphaeMucormycosis
Bradyzoite cysts + tachyzoitesToxoplasmosis
References
  • Love S, et al. Greenfield's Neuropathology. 9th ed. 2015.
  • Ellison D, et al. Neuropathology. 3rd ed. 2013.
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