Basic Science Pathology

Metabolic & Storage Diseases

Metabolic & Storage Diseases

What Do You Need to Know?

  • Sphingolipidoses: enzyme defects, inheritance, and distinguishing features (Tay-Sachs, Gaucher, Fabry, Niemann-Pick)
  • Cherry-red spot diseases: Tay-Sachs, Sandhoff, Niemann-Pick A, GM1 gangliosidosis, sialidosis
  • Gaucher disease = most common lysosomal storage disease; GBA mutations are a risk factor for Parkinson disease
  • Fabry disease = only X-linked sphingolipidosis; painful acroparesthesias, renal failure, stroke
  • Wilson disease: ATP7B, copper accumulation, Kayser-Fleischer rings, low ceruloplasmin, “face of the giant panda” on MRI
  • Mucopolysaccharidoses: all AR except Hunter (X-linked); all have corneal clouding except Hunter
  • Amino acid disorders: PKU (newborn screening), maple syrup urine disease, homocystinuria (downward lens subluxation)
  • Key MRI signs: “eye of the tiger” (PKAN), “face of the giant panda” (Wilson)
Sphingolipidoses

The sphingolipidoses are the most board-tested category of lysosomal storage diseases. All are autosomal recessive except Fabry disease (X-linked recessive).

Sphingolipidoses Overview Table

Disease Enzyme Deficiency Accumulated Substrate Key Features
Tay-SachsHexosaminidase AGM2 gangliosideCherry-red spot, progressive neurodegeneration, NO hepatosplenomegaly; Ashkenazi Jewish
SandhoffHexosaminidase A + BGM2 ganglioside + globosideCherry-red spot WITH hepatosplenomegaly (distinguishes from Tay-Sachs)
Niemann-Pick ASphingomyelinase (acid)SphingomyelinCherry-red spot, foam cells, hepatosplenomegaly, fatal by age 3
Niemann-Pick BSphingomyelinase (acid)SphingomyelinHepatosplenomegaly, pulmonary disease, NO neurologic involvement
Niemann-Pick CNPC1/NPC2 (cholesterol transporter)Unesterified cholesterolVertical supranuclear gaze palsy, ataxia, dystonia, dementia, gelastic cataplexy
Gaucher (type 1)Glucocerebrosidase (GBA)GlucocerebrosideMost common LSD; hepatosplenomegaly, bone disease; NO neuro involvement
Gaucher (type 2/3)Glucocerebrosidase (GBA)GlucocerebrosideNeuronopathic forms; type 2 = acute infantile (fatal); type 3 = chronic
FabryAlpha-galactosidase AGlobotriaosylceramide (Gb3)X-linked recessive; acroparesthesias, angiokeratomas, corneal verticillata, renal failure, stroke
GM1 gangliosidosisBeta-galactosidaseGM1 gangliosideCherry-red spot, skeletal dysplasia, hepatosplenomegaly
KrabbeGalactocerebrosidaseGalactocerebrosideGloboid cell leukodystrophy, irritability, spasticity, peripheral neuropathy
Metachromatic leukodystrophyArylsulfatase ASulfatideDemyelination (central + peripheral), metachromatic granules on biopsy
Board Pearl

Tay-Sachs vs. Sandhoff: both have cherry-red spot + GM2 accumulation. Tay-Sachs = hex A only, NO hepatosplenomegaly. Sandhoff = hex A + B, WITH hepatosplenomegaly. Tay-Sachs is the most commonly tested sphingolipidosis on boards.

Cherry-Red Spot Diseases

  • The cherry-red spot represents the normal fovea surrounded by lipid-laden, pale-appearing ganglion cells
  • Mnemonic — “TaSNiGS”:
    • Tay-Sachs
    • Sandhoff
    • Niemann-Pick A
    • GM1 gangliosidosis
    • Sialidosis (neuraminidase deficiency)
  • Also seen in central retinal artery occlusion (CRAO) — different mechanism (ischemic, not storage)

Tay-Sachs Disease

  • Enzyme: hexosaminidase A deficiency
  • Inheritance: AR; carrier frequency 1/30 in Ashkenazi Jewish population
  • Onset: 3–6 months — developmental regression, exaggerated startle response (hyperacusis)
  • Exam: cherry-red spot on fundoscopy, progressive hypotonia → spasticity, seizures, blindness, macrocephaly
  • Key distinction: NO hepatosplenomegaly (GM2 accumulates in neurons only, not viscera)
  • Pathology: neuronal swelling with membranous cytoplasmic bodies on EM
  • Prognosis: death by age 3–5 years; no specific treatment

Gaucher Disease

  • Enzyme: glucocerebrosidase (GBA) deficiency
  • Most common lysosomal storage disease
  • Pathology: Gaucher cells — macrophages with “crumpled tissue paper” or “wrinkled paper” cytoplasm

Gaucher Disease Types

Type Onset Neurologic? Features
Type 1 (90%)VariableNoHepatosplenomegaly, pancytopenia, bone crises, Erlenmeyer flask deformity; Ashkenazi Jewish; ERT available
Type 2InfancyYes (acute)Rapidly progressive; bulbar signs, seizures, spasticity; fatal by age 2
Type 3ChildhoodYes (chronic)Slower neurodegeneration; horizontal supranuclear gaze palsy, myoclonus, ataxia
Board Pearl

GBA mutations are the most common genetic risk factor for Parkinson disease. Heterozygous GBA carriers have a 5–10x increased risk of developing PD. Gaucher cells with “crumpled tissue paper” cytoplasm are pathognomonic.

Fabry Disease

  • Enzyme: alpha-galactosidase A deficiency
  • Inheritance: X-linked recessive — the only X-linked sphingolipidosis
  • Accumulated substrate: globotriaosylceramide (Gb3)
  • Neurologic: painful acroparesthesias (burning pain in hands/feet, triggered by heat/exercise), small fiber neuropathy, stroke (young adults)
  • Dermatologic: angiokeratomas (dark red papules, classically in “bathing trunk” distribution)
  • Ophthalmologic: corneal verticillata (whorl-like corneal deposits)
  • Renal: progressive nephropathy → renal failure (leading cause of death)
  • Cardiac: left ventricular hypertrophy, arrhythmias, cardiomyopathy
  • Treatment: enzyme replacement therapy (agalsidase alfa or agalsidase beta); oral chaperone therapy (migalastat) for amenable mutations
  • Female carriers can be symptomatic due to random X-inactivation (lyonization)

Niemann-Pick Type C

  • Gene: NPC1 (95%) or NPC2 — intracellular cholesterol transport defect (NOT a sphingomyelinase deficiency)
  • Presentation: childhood-onset progressive ataxia, dystonia, cognitive decline
  • Hallmark: vertical supranuclear gaze palsy (initially downgaze, then upgaze)
  • Other features: gelastic cataplexy, neonatal cholestasis, hepatosplenomegaly
  • Diagnosis: filipin staining of skin fibroblasts, oxysterol biomarkers
  • Treatment: miglustat (substrate reduction therapy)
Board Pearl

Niemann-Pick C is a “cholesterol trafficking” disorder, NOT a sphingomyelinase deficiency (unlike NP-A/B). The combination of vertical supranuclear gaze palsy + ataxia + cognitive decline in a child or young adult should prompt evaluation for NPC.

Mucopolysaccharidoses (MPS)

Group of lysosomal storage diseases caused by defective degradation of glycosaminoglycans (GAGs). All are autosomal recessive except MPS II (Hunter) — X-linked recessive.

MPS Overview Table

Type Eponym Enzyme Deficiency Inheritance Key Features
MPS IHurler / ScheieAlpha-L-iduronidaseARCorneal clouding, dysostosis multiplex, coarse facies, intellectual disability (Hurler); Scheie = milder
MPS IIHunterIduronate sulfataseX-linkedSimilar to Hurler but NO corneal clouding; pebbly skin lesions (ivory-colored papules)
MPS IIISanfilippo (A–D)Heparan sulfate degradation enzymesARSevere behavioral and cognitive decline; mild somatic features
MPS IVMorquioKeratan sulfate degradationARSevere skeletal dysplasia, odontoid hypoplasia (C1–C2 instability), corneal clouding, normal intelligence
  • All MPS have corneal clouding EXCEPT Hunter (MPS II)
  • Hunter is the only X-linked MPS — “Hunters need to see (clear corneas) and are X-linked”
  • Diagnosis: elevated urinary GAGs + specific enzyme assay
  • Treatment: enzyme replacement therapy and/or hematopoietic stem cell transplantation (MPS I)
Board Pearl

Board-favorite MPS facts: (1) Hunter = only X-linked MPS, NO corneal clouding. (2) Sanfilippo = predominantly neurologic/behavioral with mild somatic features. (3) Morquio = severe skeletal disease but normal intelligence. (4) Hurler = the most severe MPS I phenotype.

Neuronal Ceroid Lipofuscinoses (NCL / Batten Disease)

Group of neurodegenerative disorders characterized by accumulation of autofluorescent lipopigment (ceroid-lipofuscin) in neurons and other cells. All are autosomal recessive.

NCL Types

Type Gene / Protein Onset Key Features EM Finding
CLN1 (infantile)PPT1 (palmitoyl protein thioesterase 1)6–24 monthsRapid regression, seizures, myoclonus, visual lossGranular osmiophilic deposits (GRODs)
CLN2 (late infantile)TPP1 (tripeptidyl peptidase 1)2–4 yearsSeizures first, then motor and cognitive decline, visual lossCurvilinear profiles
CLN3 (juvenile / Batten)CLN3 protein (battenin)4–7 yearsVisual loss first (retinal degeneration), then seizures and cognitive declineFingerprint bodies
  • Common features: progressive seizures, visual loss, cognitive decline, motor deterioration → early death
  • Diagnosis: enzyme assay (CLN1, CLN2), genetic testing, skin/conjunctival biopsy showing autofluorescent lipopigment
  • Treatment: cerliponase alfa (intracerebroventricular ERT for CLN2)
Glycogen Storage Diseases with Neurologic Features

Key GSDs Table

Disease Enzyme Deficiency Inheritance Key Neurologic Features
Pompe (GSD II)Acid maltase (acid alpha-glucosidase / GAA)ARInfantile: severe hypotonia (“floppy baby”), cardiomegaly, macroglossia; Late-onset: limb-girdle weakness + respiratory failure
McArdle (GSD V)MyophosphorylaseARExercise intolerance, myalgia, myoglobinuria, “second-wind” phenomenon; no rise in lactate on forearm exercise test
DanonLAMP2X-linkedCardiomyopathy + myopathy + intellectual disability; vacuolar myopathy with autophagic material

Pompe Disease — Key Details

  • Infantile-onset: massive cardiomegaly, generalized hypotonia, feeding difficulty, tongue enlargement; death by age 1–2 without treatment
  • Late-onset: progressive proximal myopathy + early respiratory failure (diaphragmatic weakness — often out of proportion to limb weakness)
  • Diagnosis: GAA enzyme activity in dried blood spot or leukocytes; acid phosphatase elevated; muscle biopsy shows vacuolar myopathy with glycogen
  • Treatment: enzyme replacement therapy (alglucosidase alfa) — improves survival in infantile form

McArdle Disease — Key Details

  • Exercise intolerance with myalgia and cramping during intense anaerobic exercise
  • Second-wind phenomenon: symptoms improve after brief rest and resumption of exercise (switch to fatty acid oxidation)
  • Forearm exercise test: no rise in venous lactate (pathognomonic), with exaggerated ammonia rise
  • Risk of rhabdomyolysis and myoglobinuria with strenuous exercise
Clinical Pearl

Late-onset Pompe should be in the differential for any patient with limb-girdle pattern weakness + respiratory failure. Unlike most myopathies, respiratory involvement is early and prominent. CK is mildly elevated. Dried blood spot enzyme assay is a simple screening test.

Amino Acid Disorders

Amino Acid Disorders Overview Table

Disease Enzyme Deficiency Inheritance Key Features
Phenylketonuria (PKU)Phenylalanine hydroxylase (PAH)ARIntellectual disability if untreated, musty/mousy odor, fair skin/hair/eyes, eczema; detected by newborn screening
Maple syrup urine diseaseBranched-chain alpha-keto acid dehydrogenaseARSweet/maple syrup urine odor, neonatal encephalopathy, feeding difficulty, opisthotonus
HomocystinuriaCystathionine beta-synthaseARMarfanoid habitus, lens subluxation (downward), stroke, intellectual disability, osteoporosis
Nonketotic hyperglycinemiaGlycine cleavage systemARNeonatal seizures, apnea, hiccups; burst-suppression pattern on EEG; elevated CSF:plasma glycine ratio

Phenylketonuria (PKU)

  • Most common amino acid disorder (~1/10,000)
  • Deficient conversion of phenylalanine → tyrosine
  • Untreated: severe intellectual disability, seizures, microcephaly, hyperactivity
  • Fair phenotype: reduced melanin synthesis (tyrosine is a melanin precursor)
  • Treatment: phenylalanine-restricted diet (lifelong); sapropterin (BH4 cofactor) for responsive patients
  • Maternal PKU: uncontrolled maternal Phe levels → microcephaly, cardiac defects, intellectual disability in offspring (even if fetus does not have PKU)

Homocystinuria

  • Lens subluxation: downward and inward (vs. Marfan → upward and temporal)
  • Vascular: arterial and venous thromboembolism, stroke at a young age
  • Skeletal: tall, thin habitus, arachnodactyly, pectus excavatum, scoliosis, osteoporosis
  • Neurologic: intellectual disability, seizures, psychiatric disturbance
  • Treatment: B6 (pyridoxine) — ~50% of patients are B6-responsive; also folate, B12, betaine, methionine-restricted diet
Board Pearl

Lens subluxation direction is a board favorite: Homocystinuria = DOWN (and in), Marfan = UP (and out). Both produce Marfanoid habitus, but homocystinuria has thrombosis risk + intellectual disability (Marfan does not). PKU screening is the prototype for newborn metabolic screening.

Urea Cycle Disorders
  • Ornithine transcarbamylase (OTC) deficiency is the most common urea cycle disorder
  • Inheritance: X-linked recessive (only X-linked UCD; all others are AR)
  • Pathophysiology: impaired conversion of ammonia to urea → hyperammonemia

Clinical Presentation

  • Neonatal: poor feeding, vomiting, lethargy → seizures → coma (within first few days of life)
  • Late-onset: episodic encephalopathy triggered by protein load, illness, or catabolic stress
  • Lab findings: elevated ammonia, elevated glutamine, low BUN, respiratory alkalosis (early) → metabolic crisis
  • Specific to OTC: elevated urinary orotic acid (distinguishes from carbamoyl phosphate synthetase I deficiency)

Diagnosis and Treatment

  • MRS (MR spectroscopy): elevated glutamine peak — hallmark of hyperammonemia
  • MRI: diffuse cerebral edema in acute crisis; chronic → cortical atrophy
  • Treatment:
    • Acute: IV sodium benzoate + sodium phenylacetate (nitrogen scavengers), arginine, hemodialysis if severe
    • Chronic: protein restriction, sodium phenylbutyrate (oral nitrogen scavenger), arginine/citrulline supplementation
    • Definitive: liver transplantation
Wilson Disease (Hepatolenticular Degeneration)
  • Gene: ATP7B (chromosome 13q14.3)
  • Inheritance: autosomal recessive
  • Pathophysiology: defective biliary copper excretion → copper accumulation in liver, brain (basal ganglia), cornea, kidneys
  • Onset: typically age 5–40 years

Clinical Features

Neurologic

  • Dystonia (most common neurologic finding)
  • Wing-beating tremor (coarse, postural)
  • Dysarthria, drooling
  • Parkinsonism (rigidity, bradykinesia)
  • Cerebellar signs (ataxia)
  • Psychiatric: personality changes, depression, psychosis — may precede neurologic symptoms by years

Hepatic

  • Acute hepatitis, chronic hepatitis, cirrhosis
  • Fulminant hepatic failure (with Coombs-negative hemolytic anemia)

Ophthalmologic

  • Kayser-Fleischer rings: copper deposition in Descemet membrane of cornea (greenish-brown ring at limbus)
  • Present in >95% of patients with neurologic Wilson; ~50% of hepatic-only Wilson
  • Best detected by slit-lamp examination
  • Sunflower cataracts (less common)

Diagnostic Workup

Test Finding
Serum ceruloplasminLow (<20 mg/dL) in ~90% of patients
24-hour urine copperElevated (>100 mcg/day)
Serum free copperElevated
Hepatic copperElevated (>250 mcg/g dry weight) — gold standard
Slit-lamp examKayser-Fleischer rings
Genetic testingATP7B mutations (confirmatory)

Neuroimaging

  • MRI brain: T2/FLAIR hyperintensity in the putamen, caudate, thalamus, midbrain, pons
  • “Face of the giant panda” sign: characteristic T2 signal pattern in the midbrain (tegmentum hyperintense, surrounding structures dark)
  • T1 hyperintensity in the basal ganglia (copper/manganese deposition)

Treatment

  • Chelation: D-penicillamine (first-line, but many side effects) or trientine (better tolerated)
  • Zinc: blocks intestinal copper absorption; used for maintenance and presymptomatic patients
  • Liver transplantation: curative; indicated for fulminant hepatic failure or decompensated cirrhosis
  • Treatment is lifelong — neurologic symptoms may initially worsen with penicillamine
Board Pearl

Wilson disease must be excluded in any patient <40 years with unexplained movement disorder, psychiatric symptoms, or liver disease. Kayser-Fleischer rings are present in >95% of neurologic Wilson. Low ceruloplasmin + high urine copper + KF rings = classic triad. The “face of the giant panda” sign on midbrain MRI is pathognomonic.

Other Metabolic Disorders

Copper, Iron, and Purine Metabolism Disorders

Disease Gene / Enzyme Inheritance Key Features
Menkes diseaseATP7A (copper ATPase)X-linked recessiveCopper deficiency (opposite of Wilson); kinky/steely hair, seizures, connective tissue abnormalities, hypothermia; fatal in infancy
PKANPANK2 (pantothenate kinase 2)AR“Eye of the tiger” sign on MRI (globus pallidus); dystonia, spasticity, pigmentary retinopathy; onset childhood
Lesch-NyhanHPRT (hypoxanthine-guanine phosphoribosyltransferase)X-linked recessiveHyperuricemia, self-injurious behavior (lip/finger biting), dystonia, choreoathetosis, intellectual disability, gout, renal stones

Menkes vs. Wilson

Feature Menkes Wilson
GeneATP7AATP7B
InheritanceX-linked recessiveAutosomal recessive
Copper statusDeficiency (low serum copper)Excess (copper accumulation)
CeruloplasminLowLow
PathophysiologyImpaired intestinal absorptionImpaired biliary excretion
HairKinky, depigmented (“steely hair”)Normal
PrognosisFatal in infancyTreatable if diagnosed early

PKAN (Pantothenate Kinase-Associated Neurodegeneration)

  • Most common form of neurodegeneration with brain iron accumulation (NBIA)
  • “Eye of the tiger” sign: T2 hypointensity in globus pallidus with central hyperintense spot — highly characteristic
  • Progressive dystonia, spasticity, rigidity, dysarthria
  • Pigmentary retinopathy, acanthocytosis on blood smear
Clinical Pearl

Both Menkes and Wilson have low ceruloplasmin, but the copper problem is opposite: Menkes = cannot absorb copper (deficiency), Wilson = cannot excrete copper (excess). Menkes presents in infancy with seizures and kinky hair; Wilson presents later with liver disease and movement disorders.

Quick Reference — High-Yield Associations Table

Finding / Clue Think of…
Cherry-red spotTay-Sachs, Sandhoff, Niemann-Pick A, GM1, sialidosis
“Crumpled tissue paper” macrophagesGaucher disease
Foam cellsNiemann-Pick disease
Angiokeratomas + acroparesthesiasFabry disease
Vertical supranuclear gaze palsy + ataxiaNiemann-Pick C
Corneal verticillataFabry disease (also amiodarone)
Kayser-Fleischer ringsWilson disease
“Face of the giant panda” on MRIWilson disease
“Eye of the tiger” on MRIPKAN
Kinky/steely hair + seizuresMenkes disease
Self-injurious behavior + hyperuricemiaLesch-Nyhan syndrome
Second-wind phenomenonMcArdle disease (GSD V)
Floppy baby + cardiomegalyPompe disease (infantile)
Limb-girdle weakness + early respiratory failureLate-onset Pompe disease
Musty/mousy odor + fair skinPKU
Downward lens subluxation + MarfanoidHomocystinuria
Burst-suppression EEG + neonatal seizuresNonketotic hyperglycinemia
Elevated glutamine on MRSHyperammonemia / urea cycle disorder
Elevated urinary orotic acid + hyperammonemiaOTC deficiency
Dysostosis multiplex + corneal cloudingMPS I (Hurler)
X-linked MPS, no corneal cloudingMPS II (Hunter)
Clinical Pearl

When evaluating a child with progressive neurodegeneration, hepatosplenomegaly, and cherry-red spot — consider Niemann-Pick A (sphingomyelinase deficiency) or Sandhoff. If cherry-red spot without hepatosplenomegaly — think Tay-Sachs. If hepatosplenomegaly without cherry-red spot — think Gaucher type 1 (no neuro) or type 3 (with neuro).

References

  1. Ropper AH, Samuels MA, Klein JP, Prasad S. Adams and Victor’s Principles of Neurology. 12th ed. McGraw Hill; 2023.
  2. Saudubray JM, Baumgartner MR, Walter JH. Inborn Metabolic Diseases: Diagnosis and Treatment. 7th ed. Springer; 2022.
  3. Pastores GM, Hughes DA. Gaucher Disease. In: Adam MP, et al., eds. GeneReviews. University of Washington; 2000 [updated 2018].
  4. Roberts EA, Schilsky ML. Diagnosis and treatment of Wilson disease: an update. Hepatology. 2008;47(6):2089–2111.
  5. Desnick RJ, Ioannou YA, Eng CM. Alpha-galactosidase A deficiency: Fabry disease. In: Scriver CR, et al., eds. The Metabolic and Molecular Bases of Inherited Disease. McGraw-Hill; 2001.
  6. Patterson MC, Hendriksz CJ, Walterfang M, et al. Recommendations for the diagnosis and management of Niemann-Pick disease type C. Mol Genet Metab. 2012;106(3):330–344.
  7. Sidransky E, Nalls MA, Aasly JO, et al. Multicenter analysis of glucocerebrosidase mutations in Parkinson’s disease. N Engl J Med. 2009;361(17):1651–1661.
  8. Blau N, van Spronsen FJ, Levy HL. Phenylketonuria. Lancet. 2010;376(9750):1417–1427.