Basic Science Physiology

Ion Channels & Membrane Physiology

Ion Channels & Membrane Physiology

What Do You Need to Know?

  • Electrolyte gradients — intracellular vs extracellular concentrations of Na+, K+, Ca2+, Cl−; Nernst equation gives equilibrium potential for each ion; Goldman equation determines resting membrane potential
  • Resting membrane potential — approximately −70 mV, set primarily by K+ leak channels; Na+/K+ ATPase is electrogenic (3 Na+ out, 2 K+ in)
  • Ion channel types — voltage-gated (Na+, K+, Ca2+), ligand-gated (nAChR, NMDA, AMPA, GABA-A, glycine), mechanically-gated, leak channels; alpha subunit = pore-forming
  • Nav channel subtypes — Nav1.1–Nav1.9 with distinct tissue distributions and channelopathies (SCN1A = Dravet, GEFS+); blocked by TTX, local anesthetics, antiepileptics
  • Calcium channel subtypes — L/N/P-Q/R/T types; P/Q antibodies = Lambert-Eaton; T-type = absence seizures (ethosuximide)
  • Channelopathies — periodic paralysis, episodic ataxias, myotonias, epilepsies; know gene-channel-phenotype associations
  • Drugs targeting ion channels — antiepileptics, local anesthetics, toxins, and their specific channel targets
Electrolyte Concentrations & Membrane Equations

Intracellular vs Extracellular Ion Concentrations

Ion Intracellular (mM) Extracellular (mM) Equilibrium Potential (Eion) Direction at Rest
K+~140~4−90 mVOutward (down concentration gradient)
Na+~15~145+60 mVInward
Ca2+~0.0001~2+120 mVInward
Mg2+~0.5~1Variable; blocks NMDA channel at rest
Cl−~5–15~110−70 to −80 mVInward (in most adult neurons)
HCO3~12~24−33 mVOutward through GABA-A channels

Nernst Equation

  • Purpose: calculates the equilibrium (reversal) potential for a single ion
  • Formula: Eion = (RT/zF) × ln([ion]out / [ion]in)
  • At 37°C, simplified: Eion = (61.5/z) × log10([ion]out / [ion]in)
  • Equilibrium potential = voltage at which there is no net movement of that ion

Goldman-Hodgkin-Katz (GHK) Equation

  • Purpose: determines the resting membrane potential considering the relative permeability to multiple ions
  • Accounts for Na+, K+, and Cl− with their respective permeabilities (P)
  • At rest, PK >> PNa (~40:1) → resting potential is closest to EK
  • During an action potential, PNa briefly exceeds PK → membrane approaches ENa
Board Pearl

The resting membrane potential (−70 mV) is closest to EK (−90 mV) because K+ permeability dominates at rest. It is not exactly EK because of small Na+ leak inward. Hyperkalemia depolarizes the resting membrane → initial hyperexcitability, then inexcitability (depolarization block).

Resting Membrane Potential

Key Determinants

  • K+ leak channels (two-pore domain, K2P) — primary determinant; open at rest, allowing K+ efflux
  • Na+/K+ ATPase — pumps 3 Na+ out and 2 K+ in per cycle = net loss of 1 positive charge = electrogenic (contributes ~−5 to −10 mV)
  • Concentration gradients — maintained by Na+/K+ ATPase; if pump fails (ischemia, digoxin toxicity) → gradients dissipate → depolarization

Na+/K+ ATPase

Feature Detail
Stoichiometry3 Na+ out, 2 K+ in per ATP hydrolyzed
Net effectElectrogenic — hyperpolarizes membrane by ~5–10 mV
Energy costConsumes ~40–70% of brain's ATP
InhibitorsDigoxin, ouabain (cardiac glycosides) — bind alpha subunit
ClinicalIschemia → ATP depletion → pump failure → K+ accumulates extracellularly, Na+ accumulates intracellularly → depolarization → excitotoxicity
Board Pearl

Do not confuse electrogenic with the primary determinant of resting potential. The Na+/K+ ATPase is electrogenic (contributes ~−5 to −10 mV), but the resting membrane potential is primarily set by K+ leak channels and the K+ concentration gradient the pump maintains.

Ion Channel Types — Classification

Overview by Gating Mechanism

Channel Type Gating Signal Examples Key Features
Voltage-gated Change in membrane potential Nav (Na+), Kv (K+), Cav (Ca2+) Action potentials, repolarization, neurotransmitter release
Ligand-gated (ionotropic) Neurotransmitter binding nAChR, NMDA, AMPA, GABA-A, Glycine, 5-HT3 Fast synaptic transmission (EPSPs and IPSPs)
Mechanically-gated Mechanical deformation Piezo1, Piezo2, hair cell channels Touch, proprioception, hearing, baroreception
Leak (constitutively open) Always open K2P (two-pore K+ channels), some Na+ leak Set resting membrane potential

Ion Channel Structure

  • Alpha (α) subunit — pore-forming subunit; determines ion selectivity and gating properties; target of most channel-blocking drugs and toxins
  • Beta (β) and auxiliary subunits — modulatory; regulate trafficking, gating kinetics, and surface expression
  • Voltage-gated Na+ and Ca2+ channels: single alpha subunit with 4 homologous domains (I–IV), each with 6 transmembrane segments (S1–S6); S4 = voltage sensor
  • Voltage-gated K+ channels: 4 separate alpha subunits assemble as a tetramer
  • Ligand-gated channels: typically pentameric (nAChR, GABA-A, glycine, 5-HT3) or tetrameric (NMDA, AMPA, kainate)
Voltage-Gated Sodium Channels (Nav)

Activation and Inactivation Gates

  • Activation gate (m gate) — opens rapidly upon depolarization → Na+ influx → rising phase of action potential
  • Inactivation gate (h gate) — closes within ~1 ms after activation → terminates Na+ influx; responsible for the absolute refractory period
  • Three channel states: resting (closed but ready), open (activated), inactivated (closed, cannot reopen until repolarization)
  • Recovery from inactivation requires membrane repolarization → clinical basis for use-dependent block by antiepileptics and local anesthetics

Nav Subtypes — Tissue Location and Associated Disorders

Subtype Gene Primary Location Associated Disorder(s)
Nav1.1SCN1ACNS (inhibitory interneurons)Dravet syndrome (loss-of-function); GEFS+
Nav1.2SCN2ACNS (axon initial segment, unmyelinated axons)Early infantile epileptic encephalopathy; benign familial neonatal-infantile seizures
Nav1.3SCN3ACNS (embryonic/neonatal brain)Focal epilepsy (rare)
Nav1.4SCN4ASkeletal muscleHyperkalemic periodic paralysis; paramyotonia congenita; sodium channel myotonia
Nav1.5SCN5ACardiac muscleLong QT syndrome type 3; Brugada syndrome
Nav1.6SCN8ACNS (nodes of Ranvier)Epileptic encephalopathy (SCN8A); critical for saltatory conduction
Nav1.7SCN9APeripheral sensory neurons (DRG)Erythromelalgia (gain-of-function); congenital insensitivity to pain (loss-of-function)
Nav1.8SCN10APeripheral sensory neurons (DRG, nociceptors)Painful neuropathy; TTX-resistant
Nav1.9SCN11APeripheral sensory neurons (DRG)Familial episodic pain syndromes; TTX-resistant

Sodium Channel Blockers

Agent Mechanism Clinical Use
Tetrodotoxin (TTX)Blocks Nav pore from extracellular side; blocks Nav1.1–1.7 (Nav1.8, 1.9 are TTX-resistant)Pufferfish poisoning → ascending paralysis, respiratory failure
SaxitoxinSame mechanism as TTX (pore blocker)Shellfish poisoning (red tide) → paralysis
Local anesthetics (lidocaine, bupivacaine)Bind intracellular side of Nav; use-dependent block (preferentially block inactivated channels)Regional anesthesia; block pain fiber conduction
CarbamazepineStabilizes inactivated state of NavFocal epilepsy, trigeminal neuralgia, bipolar disorder
PhenytoinStabilizes inactivated state of NavFocal and tonic-clonic epilepsy
LamotrigineStabilizes inactivated state of Nav; also inhibits glutamate releaseBroad-spectrum AED; bipolar maintenance
LacosamideEnhances slow inactivation of Nav (unique mechanism)Focal epilepsy
Board Pearl

Dravet syndrome (SCN1A loss-of-function) produces epilepsy because Nav1.1 is preferentially expressed in inhibitory interneurons. Loss of Nav1.1 → impaired interneuron firing → disinhibition → seizures. Na+ channel-blocking AEDs (carbamazepine, phenytoin) can worsen Dravet syndrome by further impairing interneuron function.

Clinical Pearl

Local anesthetics and AEDs (carbamazepine, phenytoin, lamotrigine) share use-dependent block — they preferentially bind the inactivated state of Nav channels. Neurons firing at high frequency (as in seizures or pain) spend more time inactivated, making them more susceptible to blockade. This is why these drugs suppress pathological high-frequency firing while sparing normal activity.

Voltage-Gated Potassium Channels (Kv)

Role in Repolarization

  • Delayed rectifier K+ channels (Kv) — open with a delay after depolarization → K+ efflux → repolarization and afterhyperpolarization
  • A-type K+ channels — rapidly inactivating; regulate firing frequency and interspike interval
  • Ca2+-activated K+ channels (BK, SK) — activated by intracellular Ca2+; contribute to afterhyperpolarization
  • KCNQ channels (Kv7, M-current) — slow K+ current that stabilizes resting potential; mutations → epilepsy

Key Kv Subtypes and Clinical Associations

Channel/Gene Function Associated Disorder
Kv1.1 (KCNA1)Juxtaparanodal K+ channels; regulate axonal excitabilityEpisodic ataxia type 1 (EA1) — brief attacks of ataxia + myokymia
Kv7.2 (KCNQ2)M-current; stabilizes resting potential in neuronsBenign familial neonatal seizures (BFNS)
Kv7.3 (KCNQ3)M-current; co-assembles with Kv7.2BFNS
Kv11.1 (hERG/KCNH2)Cardiac repolarizationLong QT syndrome type 2
Kir6.2 (KCNJ11)ATP-sensitive K+ channels in beta cellsNeonatal diabetes; hyperinsulinism

Potassium Channel Blockers

  • 4-Aminopyridine (dalfampridine/fampridine) — blocks Kv channels → prolongs action potential → enhances conduction in demyelinated axons; approved for walking improvement in MS
  • Tetraethylammonium (TEA) — non-selective Kv blocker; experimental use
  • 3,4-Diaminopyridine (amifampridine) — blocks presynaptic Kv → prolonged depolarization → increased Ca2+ entry → enhanced ACh release; used in Lambert-Eaton myasthenic syndrome
Board Pearl

Episodic ataxia type 1 (EA1) = KCNA1 (Kv1.1) mutation. Presents with brief attacks of ataxia (seconds to minutes) with interictal myokymia (visible muscle rippling). Contrast with EA2 = CACNA1A (P/Q Ca2+ channel) which has longer attacks (hours to days) with interictal nystagmus and responds to acetazolamide.

Voltage-Gated Calcium Channels (Cav)

Subtype Comparison Table

Type Gene Location Function Blocker Associated Disorder
L-type (Cav1.x) CACNA1S (Cav1.1), CACNA1C (Cav1.2) Skeletal muscle, cardiac muscle, smooth muscle, neurons (dendrites/soma) Excitation-contraction coupling; gene expression Dihydropyridines (nifedipine, amlodipine); verapamil; diltiazem Hypokalemic periodic paralysis type 1 (CACNA1S); Timothy syndrome (CACNA1C)
N-type (Cav2.2) CACNA1B Presynaptic nerve terminals (CNS, PNS) Neurotransmitter release ω-Conotoxin
P/Q-type (Cav2.1) CACNA1A Presynaptic terminals (NMJ, cerebellum, CNS) Neurotransmitter release (dominant at NMJ and cerebellar synapses) ω-Agatoxin Lambert-Eaton (P/Q-type Ab); EA2; FHM type 1; SCA6
R-type (Cav2.3) CACNA1E CNS neurons (soma, dendrites) Modulates neurotransmitter release; neuronal excitability SNX-482 Epileptic encephalopathy (rare)
T-type (Cav3.x) CACNA1G, 1H, 1I Thalamic relay neurons, cardiac SA node, neurons Low-threshold spikes; thalamocortical oscillations; pacemaker activity Ethosuximide Absence epilepsy (thalamic T-type → 3 Hz spike-wave); childhood absence epilepsy (CACNA1H)

Presynaptic Calcium and Neurotransmitter Release

  • Action potential arrives at presynaptic terminal → depolarization opens N-type and P/Q-type Ca2+ channels
  • Ca2+ influx → binds synaptotagmin (Ca2+ sensor) → triggers SNARE complex-mediated vesicle fusion → neurotransmitter release
  • Lambert-Eaton: antibodies against P/Q-type Ca2+ channels at presynaptic terminal → decreased Ca2+ entry → decreased ACh release → proximal weakness, autonomic dysfunction
  • Facilitation at high-rate stimulation: residual presynaptic Ca2+ accumulates → progressive increase in NT release → incremental response on repetitive nerve stimulation (unlike MG which decrements)
Board Pearl

CACNA1A (P/Q-type Ca2+ channel gene) is a neurological chameleon — different mutation types cause different diseases: point mutations → FHM type 1 or EA2; trinucleotide (CAG) repeat expansion → SCA6; antibodies against the channel → Lambert-Eaton myasthenic syndrome.

Clinical Pearl

Absence seizures arise from abnormal thalamocortical oscillations driven by T-type Ca2+ channels in thalamic relay neurons. These channels activate at low (hyperpolarized) voltages, generating rhythmic burst firing that produces the characteristic 3 Hz generalized spike-and-wave pattern. Ethosuximide selectively blocks T-type channels, making it first-line for childhood absence epilepsy but ineffective for other seizure types.

Ligand-Gated Ion Channels

Comparison Table

Receptor Ion Conducted Effect Agonist Antagonist Clinical Relevance
Nicotinic AChR (nAChR) Na+, K+ Excitatory (EPSP, muscle contraction) ACh, nicotine, succinylcholine Curare, vecuronium, α-bungarotoxin Myasthenia gravis (Ab to AChR); NMJ blockade; congenital myasthenic syndromes
NMDA Ca2+, Na+ Excitatory (slow EPSP, LTP) Glutamate + glycine (co-agonist) Ketamine, PCP, memantine, Mg2+ (voltage-dependent) Anti-NMDAR encephalitis; excitotoxicity; LTP/memory
AMPA Na+, K+ Excitatory (fast EPSP) Glutamate Perampanel Mediates majority of fast excitatory transmission; epilepsy target
GABA-A Cl− Inhibitory (fast IPSP) GABA, muscimol Bicuculline, picrotoxin, flumazenil (BZD-specific) Epilepsy (target of BZDs, barbiturates); anti-GAD Ab → stiff-person syndrome
Glycine Cl− Inhibitory (spinal/brainstem) Glycine Strychnine Hyperekplexia (GLRA1 mutations); tetanus (blocks glycine release)
5-HT3 Na+, K+ Excitatory Serotonin Ondansetron, granisetron Anti-emetic (chemotherapy); only ionotropic serotonin receptor

Key Structural Features

  • Cys-loop family (pentameric): nAChR, GABA-A, glycine, 5-HT3 — all share a conserved cysteine loop
  • Glutamate receptor family (tetrameric): NMDA, AMPA, kainate
  • nAChR at NMJ (NM): composed of 2α1, β1, δ, ε subunits; MG autoantibodies typically target the α1 subunit
  • GABA-A: most common configuration 2α, 2β, 1γ; BZDs bind at the α/γ interface; GABA binds at the α/β interface
Channelopathies

Master Comparison Table

Disorder Gene Channel Key Clinical Features
Periodic Paralysis
Hyperkalemic PP (HyperKPP)SCN4ANav1.4 (skeletal muscle Na+)Brief attacks (<2 hrs); triggered by rest after exercise, fasting, K+ intake; myotonia between attacks; serum K+ elevated during attack
Hypokalemic PP type 1CACNA1SCav1.1 (skeletal muscle L-type Ca2+)Prolonged attacks (hours–days); triggered by carbohydrate load, rest after exercise, insulin; serum K+ low during attack
Hypokalemic PP type 2SCN4ANav1.4Similar to type 1; less common; SCN4A mutation with different functional effect than HyperKPP
Episodic Ataxias
Episodic ataxia type 1 (EA1)KCNA1Kv1.1 (voltage-gated K+)Brief attacks (seconds–minutes); interictal myokymia; responds to carbamazepine
Episodic ataxia type 2 (EA2)CACNA1ACav2.1 (P/Q-type Ca2+)Longer attacks (hours–days); interictal nystagmus, progressive ataxia; responds to acetazolamide
Myotonias
Paramyotonia congenitaSCN4ANav1.4Myotonia worsened by cold and exercise (paradoxical myotonia); face and hands; may have episodic weakness
Myotonia congenita (Thomsen/Becker)CLCN1ClC-1 (skeletal muscle Cl− channel)Muscle stiffness relieved by activity (warm-up phenomenon); Thomsen = AD, Becker = AR (more severe)
Epilepsies
GEFS+ (genetic epilepsy with febrile seizures plus)SCN1A, SCN1B, GABRG2Nav1.1, Nav β1, GABA-A γ2Febrile seizures persisting beyond age 6; variable severity within families
Dravet syndromeSCN1ANav1.1 (loss-of-function)Severe infantile epileptic encephalopathy; prolonged febrile seizures; developmental regression; refractory to Na+ channel blockers
Benign familial neonatal seizures (BFNS)KCNQ2, KCNQ3Kv7.2, Kv7.3 (M-current)Seizures in first week of life; self-limited; good prognosis
Childhood absence epilepsyCACNA1A, CACNA1H, GABRG2P/Q-type Ca2+, T-type Ca2+, GABA-ATypical 3 Hz spike-wave; staring spells; ethosuximide first-line
Board Pearl

Sodium channel-blocking AEDs (carbamazepine, phenytoin, lamotrigine) can worsen Dravet syndrome and myoclonic epilepsies. In Dravet (SCN1A loss-of-function), the remaining Nav1.1 channels on inhibitory interneurons are further blocked, worsening disinhibition and seizures.

Drugs Targeting Ion Channels

Summary Table

Drug Channel Target Mechanism Clinical Use
CarbamazepineNav (fast inactivation)Stabilizes inactivated state; use-dependent blockFocal epilepsy, trigeminal neuralgia
PhenytoinNav (fast inactivation)Stabilizes inactivated state; use-dependent blockFocal and tonic-clonic epilepsy
LamotrigineNav; also glutamate releaseStabilizes inactivated state; reduces glutamateBroad-spectrum AED; bipolar maintenance
LacosamideNav (slow inactivation)Enhances slow inactivation (unique mechanism)Focal epilepsy
EthosuximideT-type Ca2+ (Cav3.x)Blocks low-threshold T-type Ca2+ currents in thalamusAbsence epilepsy (first-line)
Gabapentin/Pregabalinα2δ subunit of CavReduces Ca2+ influx at presynaptic terminals → decreased NT releaseNeuropathic pain, epilepsy (adjunctive)
BenzodiazepinesGABA-A (Cl−)↑ Frequency of Cl− channel opening (requires GABA)Seizures (acute), anxiety, spasticity
BarbituratesGABA-A (Cl−)↑ Duration of Cl− channel opening (can act without GABA)Refractory status epilepticus
PerampanelAMPA receptorNon-competitive AMPA antagonistFocal and generalized tonic-clonic epilepsy
MemantineNMDA receptorOpen-channel blocker (low affinity, uncompetitive)Moderate-severe Alzheimer's
Retigabine (ezogabine)KCNQ2/3 (Kv7)Opens Kv7 K+ channels → membrane stabilizationRefractory focal epilepsy (withdrawn due to side effects)
4-Aminopyridine (dalfampridine)Kv channelsBlocks K+ channels → prolongs AP in demyelinated axonsWalking improvement in MS
3,4-Diaminopyridine (amifampridine)Presynaptic Kv channelsBlocks K+ channels → prolonged depolarization → ↑ Ca2+ entry → ↑ ACh releaseLambert-Eaton myasthenic syndrome
Verapamil/DiltiazemL-type Ca2+ (Cav1.2)Blocks cardiac and smooth muscle L-type Ca2+ channelsHypertension, arrhythmia, migraine prophylaxis
NimodipineL-type Ca2+ (cerebral vascular)Selective cerebral vascular dihydropyridineVasospasm after subarachnoid hemorrhage
Tetrodotoxin (TTX)Nav (pore blocker)Blocks Nav from extracellular sidePufferfish poisoning (no clinical use)
LidocaineNav (intracellular)Use-dependent block; binds inactivated stateLocal anesthesia; cardiac arrhythmia
RiluzoleNav; also reduces glutamate releaseInhibits presynaptic glutamate release; blocks Na+ channelsALS
Board Pearl

Gabapentin and pregabalin do NOT directly act on GABA receptors. Despite their names, they bind the α2δ auxiliary subunit of voltage-gated Ca2+ channels, reducing presynaptic Ca2+ influx and neurotransmitter release. They are used for neuropathic pain, not as GABAergic drugs.

Clinical Pearl

In Lambert-Eaton myasthenic syndrome, the treatment strategy follows the pathophysiology: antibodies reduce presynaptic P/Q-type Ca2+ channel density → decreased Ca2+ entry → decreased ACh release. 3,4-Diaminopyridine blocks presynaptic K+ channels, prolonging depolarization and allowing more Ca2+ influx through remaining channels → increased ACh release. This is why incremental response is seen on high-rate repetitive stimulation — residual Ca2+ accumulates with rapid firing.

Quick Reference

High-Yield One-Liners

  • Resting membrane potential — ~−70 mV; set by K+ leak channels; closest to EK
  • Na+/K+ ATPase — 3 Na+ out, 2 K+ in; electrogenic; consumes most neuronal ATP
  • Nernst equation — equilibrium potential for one ion; Goldman equation — resting potential for multiple ions
  • Nav inactivation gate — basis of absolute refractory period and use-dependent drug block
  • SCN1A loss-of-function → Dravet syndrome; avoid Na+ channel blockers
  • SCN4A → hyperkalemic PP, paramyotonia congenita, hypokalemic PP type 2
  • CACNA1A → EA2, FHM1, SCA6; antibodies to the same channel → Lambert-Eaton
  • CACNA1S → hypokalemic periodic paralysis type 1
  • KCNA1 → EA1 (brief attacks + myokymia)
  • KCNQ2/3 → benign familial neonatal seizures
  • CLCN1 → myotonia congenita (Thomsen/Becker); warm-up phenomenon
  • T-type Ca2+ channels → thalamic oscillations → absence seizures; ethosuximide
  • P/Q-type Ca2+ channels → presynaptic NT release at NMJ; Lambert-Eaton antibody target
  • BZDs — ↑ frequency of Cl− opening; Barbiturates — ↑ duration
  • 4-AP (dalfampridine) — K+ channel blocker for MS walking; 3,4-DAP — for Lambert-Eaton
  • TTX/saxitoxin — pore blockers (extracellular); local anesthetics — intracellular Nav block

Channel Gene Quick-Match Table

Gene Channel Disorder
SCN1ANav1.1Dravet, GEFS+
SCN2ANav1.2Early infantile epilepsy
SCN4ANav1.4HyperKPP, paramyotonia, HypoKPP type 2
SCN5ANav1.5Long QT type 3, Brugada
SCN8ANav1.6SCN8A epileptic encephalopathy
SCN9ANav1.7Erythromelalgia, congenital pain insensitivity
KCNA1Kv1.1EA1
KCNQ2Kv7.2BFNS
CACNA1ACav2.1 (P/Q)EA2, FHM1, SCA6
CACNA1SCav1.1 (L)HypoKPP type 1
CLCN1ClC-1Myotonia congenita

References

  • Bhatt A. Ultimate Review for the Neurology Boards. 3rd ed. Demos Medical; 2016. Chapter 1: Neuroscience.
  • Blumenfeld H. Neuroanatomy Through Clinical Cases. 3rd ed. Sinauer Associates; 2021.
  • Hille B. Ion Channels of Excitable Membranes. 3rd ed. Sinauer Associates; 2001.
  • Purves D, et al. Neuroscience. 6th ed. Oxford University Press; 2018.
  • Ropper AH, Samuels MA, Klein JP, Prasad S. Adams and Victor's Principles of Neurology. 12th ed. McGraw-Hill; 2023.
  • Kullmann DM. Neurological channelopathies. Annu Rev Neurosci. 2010;33:151-172.